SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12730735	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12735104	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12748727	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12760457	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17509390	0.80[EUR][1000 genomes]
rs34877889	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36115604	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3789607	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3789609	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7533605	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7549685	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7555354	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PTPN22	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)