SNP Report
Basic Infomation
| Name | rs7140546 dbSNP |
|---|---|
| Location | chr:14,69126756 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10143428 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs10149893 | 1.00[CHB][hapmap] |
| rs11623966 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11627234 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11628293 | 1.00[CHB][hapmap] |
| rs11629144 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11846143 | 0.88[ASW][hapmap];0.94[GIH][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs17106069 | 1.00[CHB][hapmap] |
| rs17829281 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs17834977 | 1.00[CHB][hapmap] |
| rs2145151 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4420467 | 0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4516148 | 1.00[CHB][hapmap] |
| rs61095830 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7143663 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs739874 | 1.00[CHB][hapmap] |
| rs8009398 | 1.00[CHB][hapmap] |
| rs8009601 | 1.00[CHB][hapmap] |
| rs999737 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259038 | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014