SNP Report
Basic Infomation
| Name | rs7123885 dbSNP |
|---|---|
| Location | chr:11,65064706 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11819804 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11821423 | 1.00[AMR][1000 genomes] |
| rs11821851 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11823327 | 1.00[AMR][1000 genomes] |
| rs11824738 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11824827 | 1.00[AMR][1000 genomes] |
| rs11826426 | 1.00[AMR][1000 genomes] |
| rs11826954 | 1.00[AMR][1000 genomes] |
| rs34286323 | 1.00[AMR][1000 genomes] |
| rs35225270 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs41544519 | 0.92[AFR][1000 genomes] |
| rs41556122 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58771438 | 1.00[AMR][1000 genomes] |
| rs7107815 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7108941 | 0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7114046 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7121464 | 1.00[AMR][1000 genomes] |
| rs73484944 | 1.00[AMR][1000 genomes] |
| rs73484972 | 1.00[AMR][1000 genomes] |
| rs7926687 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7927821 | 0.84[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| POLA2 | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014