SNP Report
Basic Infomation
| Name | rs7091015 dbSNP |
|---|---|
| Location | chr:10,93525930 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509635 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11592379 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11592407 | 0.88[CEU][hapmap] |
| rs11594359 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11598220 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs11598809 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11599407 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap] |
| rs17107004 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17107019 | 0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs2000139 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap] |
| rs2275646 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap] |
| rs2421698 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs7072165 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap] |
| rs7072687 | 0.88[CEU][hapmap] |
| rs7076618 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap] |
| rs7894188 | 1.00[CEU][hapmap] |
| rs7895548 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs7920215 | 0.90[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000228701 | Distal transcriptional regulation |
| TNKS2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014