SNP Report
Basic Infomation
| Name | rs6897575 dbSNP |
|---|---|
| Location | chr:5,131604535 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10076701 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10463892 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2087096 | 0.82[ASN][1000 genomes] |
| rs3852207 | 0.90[ASN][1000 genomes] |
| rs57560761 | 0.90[ASN][1000 genomes] |
| rs57744805 | 0.90[ASN][1000 genomes] |
| rs58835386 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs60492295 | 0.90[ASN][1000 genomes] |
| rs61119904 | 0.90[ASN][1000 genomes] |
| rs7447266 | 0.90[ASN][1000 genomes] |
| rs7727038 | 0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7727544 | 0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7736102 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7737937 | 0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDLIM4 | Proximal transcriptional regulation |
| ENSG00000224015 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
| PDLIM4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014