SNP Report
Basic Infomation
| Name | rs6743445 dbSNP |
|---|---|
| Location | chr:2,65604162 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10165161 | 0.85[AFR][1000 genomes] |
| rs10188658 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap] |
| rs1039764 | 0.80[YRI][hapmap] |
| rs11542083 | 1.00[EUR][1000 genomes] |
| rs11553103 | 1.00[EUR][1000 genomes] |
| rs17030083 | 1.00[EUR][1000 genomes] |
| rs17030111 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs17030116 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs17030170 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs17030217 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs56750585 | 1.00[EUR][1000 genomes] |
| rs57427101 | 1.00[EUR][1000 genomes] |
| rs57562769 | 1.00[EUR][1000 genomes] |
| rs58805122 | 1.00[EUR][1000 genomes] |
| rs59289409 | 1.00[EUR][1000 genomes] |
| rs60435218 | 1.00[EUR][1000 genomes] |
| rs61003323 | 1.00[EUR][1000 genomes] |
| rs61330787 | 0.86[AFR][1000 genomes] |
| rs6546139 | 1.00[EUR][1000 genomes] |
| rs6727354 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7570887 | 1.00[EUR][1000 genomes] |
| rs7579872 | 1.00[EUR][1000 genomes] |
| rs7590888 | 0.84[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Distal transcriptional regulation |
| ENSG00000204929 | Distal transcriptional regulation |
| ENSG00000232693 | RNA binding protein mediated regulation |
| SPRED2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CPEB4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014