SNP Report
Basic Infomation
| Name | rs6740462 dbSNP |
|---|---|
| Location | chr:2,65667272 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11685231 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11689701 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs12185613 | 0.99[ASN][1000 genomes] |
| rs12613858 | 0.96[ASN][1000 genomes] |
| rs1437459 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1437460 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1437465 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs2099579 | 0.95[ASN][1000 genomes] |
| rs2118304 | 0.93[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs268123 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs268124 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2901767 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4671129 | 1.00[ASN][1000 genomes] |
| rs4671664 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4671665 | 0.98[ASN][1000 genomes] |
| rs66931669 | 0.94[ASN][1000 genomes] |
| rs6711681 | 1.00[ASN][1000 genomes] |
| rs67403458 | 0.96[ASN][1000 genomes] |
| rs72805798 | 0.95[ASN][1000 genomes] |
| rs72808008 | 0.96[ASN][1000 genomes] |
| rs72898508 | 0.95[ASN][1000 genomes] |
| rs7561538 | 0.95[ASN][1000 genomes] |
| rs7566618 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs934730 | 0.93[ASN][1000 genomes] |
| rs934736 | 0.93[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACTR2 | Distal transcriptional regulation |
| SPRED2 | Distal transcriptional regulation |
| ENSG00000204929 | Distal transcriptional regulation |
| ENSG00000204929 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CNRIP1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014