SNP Report

Basic Infomation

Name	rs6687776 dbSNP
Location	chr:1,1030565
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11579015	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs11807848	0.94[CHB][hapmap]
rs12726255	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs12748370	0.88[CHB][hapmap]
rs12755848	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs12757754	0.94[CHB][hapmap]
rs17160824	0.94[CHB][hapmap]
rs17160826	0.94[CHB][hapmap]
rs4970353	0.91[ASN][1000 genomes]
rs4970405	0.88[CHB][hapmap]
rs4970409	0.94[CHB][hapmap]
rs6604964	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6604965	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6604966	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6604967	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6604968	0.83[ASW][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs6666280	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs6671356	0.83[ASW][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[MKK][hapmap];0.81[TSI][hapmap]
rs6678318	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689308	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698368	0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6699750	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71576594	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9651270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
C1orf159	Proximal transcriptional regulation
C1orf159	Distal transcriptional regulation
SDF4	Distal transcriptional regulation
B3GALT6	Distal transcriptional regulation
ENSG00000217801	Distal transcriptional regulation
RNF223	Distal transcriptional regulation
C1orf159	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)