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rVarBase
SNP Report
Basic Infomation
Name
rs6686003  
dbSNP
Location
chr:1,1089699
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs35569523
1.00[TSI][hapmap]
rs6700376
1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74045132
0.81[AMR][1000 genomes]
rs74045133
0.88[AMR][1000 genomes]
rs74045135
0.81[AMR][1000 genomes]
rs74045136
0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74045137
0.81[AMR][1000 genomes]
rs74045138
0.88[AMR][1000 genomes]
rs74045143
0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74045144
0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7553429
0.85[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
MIR200B
Distal transcriptional regulation
MIR200A
Distal transcriptional regulation
MIR429
Distal transcriptional regulation
ENSG00000223823
Distal transcriptional regulation
TTLL10
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)