SNP Report
Basic Infomation
| Name | rs6661354 dbSNP |
|---|---|
| Location | chr:1,1218006 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11466667 | 1.00[AMR][1000 genomes] |
| rs11466670 | 1.00[AMR][1000 genomes] |
| rs307347 | 1.00[EUR][1000 genomes] |
| rs307352 | 1.00[EUR][1000 genomes] |
| rs307367 | 1.00[EUR][1000 genomes] |
| rs307375 | 1.00[EUR][1000 genomes] |
| rs34738574 | 1.00[EUR][1000 genomes] |
| rs34810828 | 1.00[TSI][hapmap] |
| rs3845294 | 1.00[EUR][1000 genomes] |
| rs60785581 | 1.00[EUR][1000 genomes] |
| rs61559999 | 1.00[EUR][1000 genomes] |
| rs61743559 | 1.00[AMR][1000 genomes] |
| rs6669227 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs6688457 | 1.00[YRI][hapmap] |
| rs7512475 | 1.00[EUR][1000 genomes] |
| rs9658804 | 1.00[EUR][1000 genomes] |
| rs9659696 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCNN1D | Proximal transcriptional regulation |
| ENSG00000231702 | Distal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| ENSG00000230415 | Distal transcriptional regulation |
| SCNN1D | Distal transcriptional regulation |
| ACAP3 | Distal transcriptional regulation |
| SCNN1D | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014