SNP Report
Basic Infomation
| Name | rs66517376 dbSNP |
|---|---|
| Location | chr:14,68088580 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11628590 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11628666 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12433361 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13343243 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17249437 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1885042 | 0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3742878 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3759757 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3759759 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4902501 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4902503 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6573787 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6573788 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs67778250 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7151920 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7161243 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs8012815 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs8013117 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8014035 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8014048 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000201529 | Proximal transcriptional regulation |
| PIGH | Distal transcriptional regulation |
| ENSG00000259648 | Distal transcriptional regulation |
| ENSG00000201529 | Distal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
| COX7A2P1 | Distal transcriptional regulation |
| ARG2 | Distal transcriptional regulation |
| ARG2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014