SNP Report
Basic Infomation
| Name | rs660442 dbSNP |
|---|---|
| Location | chr:11,64042997 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2286613 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs3759057 | 1.00[AFR][1000 genomes] |
| rs61886887 | 1.00[AFR][1000 genomes] |
| rs61886930 | 1.00[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BAD | Proximal transcriptional regulation |
| GPR137 | Proximal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| ENSG00000207024 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| BAD | RNA binding protein mediated regulation |
| GPR137 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014