SNP Report
Basic Infomation
| Name | rs6427128 dbSNP |
|---|---|
| Location | chr:1,155026942 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs4745 | 0.82[ASW][hapmap] |
| rs6660884 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ADAM15 | Proximal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| EFNA3 | Distal transcriptional regulation |
| ADAM15 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 55)
| eQTL related gene | Source |
|---|---|
| TSR1 | SCAN |
| KDELR2 | SCAN |
| LOC649395 | SCAN |
| PSMD8 | SCAN |
| WIPI2 | SCAN |
| ZDHHC16 | SCAN |
| RCBTB1 | SCAN |
| SEC23IP | SCAN |
| HIST1H4B | SCAN |
| DPM2 | SCAN |
| STAM | SCAN |
| CCDC88A | SCAN |
| GORASP2 | SCAN |
| EIF3K | SCAN |
| ARPC4 | SCAN |
| SYNE2 | SCAN |
| PREPL | SCAN |
| FAM119A | SCAN |
| C7orf42 | SCAN |
| RPRD1A | SCAN |
| M6PR | SCAN |
| MLL | SCAN |
| GATC | SCAN |
| DPY19L1 | SCAN |
| RCN1 | SCAN |
| VEZF1 | SCAN |
| ATRX | SCAN |
| SETD2 | SCAN |
| IPO8 | SCAN |
| HUWE1 | SCAN |
| CCDC88A | SCAN |
| SRP68 | SCAN |
| PPP2R5C | SCAN |
| SOCS4 | SCAN |
| MNT | SCAN |
| ERI3 | SCAN |
| AP1G1 | SCAN |
| MIA2 | SCAN |
| ADAM15 | SCAN |
| CCDC88A | SCAN |
| ZNF644 | SCAN |
| FURIN | SCAN |
| KIAA1109 | SCAN |
| TICAM2 | SCAN |
| UBE2Q1 | SCAN |
| LRTOMT | SCAN |
| SON | SCAN |
| MALAT1 | SCAN |
| RHBDD1 | SCAN |
| LOC344382 | SCAN |
| GEMIN7 | SCAN |
| RTN3 | SCAN |
| C12orf49 | SCAN |
| PKN2 | SCAN |
| GOLT1B | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014