SNP Report
Basic Infomation
| Name | rs62207423 dbSNP |
|---|---|
| Location | chr:20,30816377 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17093827 | 1.00[EUR][1000 genomes] |
| rs2223785 | 1.00[EUR][1000 genomes] |
| rs2297303 | 1.00[EUR][1000 genomes] |
| rs6061187 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62204982 | 1.00[EUR][1000 genomes] |
| rs62204983 | 1.00[EUR][1000 genomes] |
| rs62206867 | 1.00[EUR][1000 genomes] |
| rs62206868 | 1.00[EUR][1000 genomes] |
| rs62206875 | 1.00[EUR][1000 genomes] |
| rs62206920 | 1.00[EUR][1000 genomes] |
| rs62207418 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62207425 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62207426 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62208760 | 1.00[EUR][1000 genomes] |
| rs62208763 | 1.00[EUR][1000 genomes] |
| rs73247031 | 1.00[EUR][1000 genomes] |
| rs73247033 | 1.00[EUR][1000 genomes] |
| rs73248931 | 1.00[EUR][1000 genomes] |
| rs73248938 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLAGL2 | Distal transcriptional regulation |
| POFUT1 | Distal transcriptional regulation |
| ENSG00000243952 | Distal transcriptional regulation |
| POFUT1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014