SNP Report
Basic Infomation
| Name | rs62025074 dbSNP |
|---|---|
| Location | chr:15,91197250 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11852380 | 0.92[EUR][1000 genomes] |
| rs12915979 | 0.91[EUR][1000 genomes] |
| rs28521639 | 0.90[ASN][1000 genomes] |
| rs34935401 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35392347 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35583150 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35907368 | 0.94[EUR][1000 genomes] |
| rs3743403 | 0.89[ASN][1000 genomes] |
| rs4404048 | 0.95[EUR][1000 genomes] |
| rs4516207 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs60433006 | 0.95[EUR][1000 genomes] |
| rs62025073 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs62025076 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62025077 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs71407321 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs71407322 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7165170 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259736 | Distal transcriptional regulation |
| BLM | Distal transcriptional regulation |
| ENSG00000245479 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014