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rVarBase
SNP Report
Basic Infomation
Name
rs6130838  
dbSNP
Location
chr:20,44085418
Allele
C/G
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2272951
0.83[AMR][1000 genomes]
rs6032210
1.00[AFR][1000 genomes]
rs6124708
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6130837
1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6130840
0.83[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
RBPJL
Distal transcriptional regulation
WFDC2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)