SNP Report
Basic Infomation
| Name | rs61190836 dbSNP |
|---|---|
| Location | chr:15,90892412 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12101545 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12102023 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16944263 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16944267 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16944270 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16944283 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs28400283 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs28696209 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35087117 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs57608780 | 0.91[AFR][1000 genomes] |
| rs61754952 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8026011 | 0.94[ASN][1000 genomes] |
| rs8032987 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8033326 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF774 | Proximal transcriptional regulation |
| GABARAPL3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014