SNP Report

Basic Infomation

Name	rs6103944 dbSNP
Location	chr:20,43598466
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 63)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10470046	0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16985365	0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16989594	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41282040	1.00[EUR][1000 genomes]
rs55658988	1.00[EUR][1000 genomes]
rs55674479	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55675747	1.00[EUR][1000 genomes]
rs56278095	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56305417	1.00[EUR][1000 genomes]
rs56402812	1.00[EUR][1000 genomes]
rs59099074	1.00[EUR][1000 genomes]
rs59468988	1.00[EUR][1000 genomes]
rs59576945	1.00[EUR][1000 genomes]
rs59828602	1.00[EUR][1000 genomes]
rs60284402	1.00[EUR][1000 genomes]
rs60334575	1.00[EUR][1000 genomes]
rs60482333	1.00[EUR][1000 genomes]
rs6094072	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6094086	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6094090	0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6094091	0.87[ASW][hapmap];0.82[LWK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103946	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6103947	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6103949	1.00[EUR][1000 genomes]
rs6103950	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6103951	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103952	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103953	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103958	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103960	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103972	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103982	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103983	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103986	0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103988	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6103992	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61094911	1.00[EUR][1000 genomes]
rs6130702	1.00[EUR][1000 genomes]
rs61329528	1.00[EUR][1000 genomes]
rs61472258	1.00[EUR][1000 genomes]
rs7261171	1.00[EUR][1000 genomes]
rs7269604	1.00[EUR][1000 genomes]
rs73292303	1.00[EUR][1000 genomes]
rs73292340	1.00[EUR][1000 genomes]
rs73292344	1.00[EUR][1000 genomes]
rs73294352	1.00[EUR][1000 genomes]
rs73294353	1.00[EUR][1000 genomes]
rs73296533	1.00[EUR][1000 genomes]
rs73296537	1.00[EUR][1000 genomes]
rs73296538	1.00[EUR][1000 genomes]
rs73296541	1.00[EUR][1000 genomes]
rs73296543	1.00[EUR][1000 genomes]
rs73296544	1.00[EUR][1000 genomes]
rs73296554	1.00[EUR][1000 genomes]
rs73296564	1.00[EUR][1000 genomes]
rs73296566	1.00[EUR][1000 genomes]
rs73296567	1.00[EUR][1000 genomes]
rs73296568	1.00[EUR][1000 genomes]
rs73296580	1.00[EUR][1000 genomes]
rs73298596	1.00[EUR][1000 genomes]
rs73300570	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73910116	1.00[EUR][1000 genomes]
rs9917448	1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
STK4	Proximal transcriptional regulation
STK4-AS1	Proximal transcriptional regulation
STK4-AS1	Distal transcriptional regulation
STK4	Distal transcriptional regulation
STK4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)