SNP Report
Basic Infomation
| Name | rs6073920 dbSNP |
|---|---|
| Location | chr:20,44447281 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1057275 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1057276 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10854234 | 1.00[AFR][1000 genomes] |
| rs11086980 | 1.00[AFR][1000 genomes] |
| rs11697801 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs11698486 | 1.00[AFR][1000 genomes] |
| rs11699105 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480144 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480250 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480813 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs12481720 | 1.00[AFR][1000 genomes] |
| rs13038132 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs13039447 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13039452 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13040683 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs34201392 | 1.00[ASN][1000 genomes] |
| rs34247032 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34685435 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35049915 | 1.00[ASN][1000 genomes] |
| rs6065890 | 1.00[AFR][1000 genomes] |
| rs6073908 | 1.00[AFR][1000 genomes] |
| rs6073909 | 1.00[AFR][1000 genomes] |
| rs6073919 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6073921 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6073922 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6073926 | 1.00[ASN][1000 genomes] |
| rs6073930 | 1.00[ASN][1000 genomes] |
| rs6073931 | 1.00[ASN][1000 genomes] |
| rs6073932 | 1.00[ASN][1000 genomes] |
| rs6073935 | 1.00[ASN][1000 genomes] |
| rs6073937 | 1.00[ASN][1000 genomes] |
| rs61750778 | 1.00[ASN][1000 genomes] |
| rs7353060 | 1.00[AFR][1000 genomes] |
| rs74174976 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74174978 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74174979 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNTTIP1 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014