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rVarBase
SNP Report
Basic Infomation
Name
rs6073643  
dbSNP
Location
chr:20,43728070
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs13043825
0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34643859
0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35456522
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6017486
1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6124687
0.86[CHB][hapmap]
rs734784
0.83[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
KCNS1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
JPH2
SCAN