SNP Report
Basic Infomation
| Name | rs60608560 dbSNP |
|---|---|
| Location | chr:12,48122024 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1859256 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57162394 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57691959 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58232701 | 0.94[AFR][1000 genomes] |
| rs58237186 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58280987 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58348653 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58350284 | 1.00[AMR][1000 genomes] |
| rs58636268 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59421933 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60045275 | 1.00[AMR][1000 genomes] |
| rs60186089 | 0.81[AFR][1000 genomes] |
| rs61033936 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61288073 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61327127 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61446607 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61734364 | 1.00[AMR][1000 genomes] |
| rs61739888 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7300107 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7308032 | 0.89[AFR][1000 genomes] |
| rs7314320 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73300689 | 1.00[AMR][1000 genomes] |
| rs73300701 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302603 | 1.00[AMR][1000 genomes] |
| rs73302628 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302629 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302650 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302653 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302662 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302664 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302673 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302677 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302679 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302681 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302682 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302698 | 0.87[AFR][1000 genomes] |
| rs757283 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7965816 | 1.00[AMR][1000 genomes] |
| rs877196 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs877197 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs877198 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs879177 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs879178 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs879179 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENDOU | Proximal transcriptional regulation |
| SLC48A1 | Distal transcriptional regulation |
| ENDOU | Distal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
| RAPGEF3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014