SNP Report
Basic Infomation
| Name | rs6060411 dbSNP |
|---|---|
| Location | chr:20,30222139 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs15817 | 0.85[AFR][1000 genomes] |
| rs2889488 | 0.86[AFR][1000 genomes] |
| rs56153385 | 0.86[AFR][1000 genomes] |
| rs6058189 | 0.87[AFR][1000 genomes] |
| rs6060142 | 0.82[AFR][1000 genomes] |
| rs6060262 | 0.87[AFR][1000 genomes] |
| rs6060296 | 0.86[AFR][1000 genomes] |
| rs6060395 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060403 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6088669 | 0.82[AFR][1000 genomes] |
| rs6120890 | 0.89[AFR][1000 genomes] |
| rs7261354 | 0.86[AFR][1000 genomes] |
| rs73235789 | 0.89[AFR][1000 genomes] |
| rs73237635 | 0.83[ASN][1000 genomes] |
| rs73237649 | 0.83[ASN][1000 genomes] |
| rs7361893 | 0.85[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COX4I2 | Proximal transcriptional regulation |
| ENSG00000246130 | Distal transcriptional regulation |
| HM13-IT1 | Distal transcriptional regulation |
| BCL2L1 | Distal transcriptional regulation |
| ID1 | Distal transcriptional regulation |
| MIR3193 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014