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rVarBase
SNP Report
Basic Infomation
Name
rs60418472  
dbSNP
Location
chr:12,49821929
Allele
T/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs4993294
0.82[AFR][1000 genomes]
rs56322609
1.00[AFR][1000 genomes]
rs57202083
1.00[AFR][1000 genomes]
rs61375453
0.98[AFR][1000 genomes]
rs74088737
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74089508
1.00[AFR][1000 genomes]
rs74089512
1.00[AFR][1000 genomes]
rs74089515
1.00[AFR][1000 genomes]
rs74089517
0.98[AFR][1000 genomes]
rs74089520
0.98[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SPATS2
Distal transcriptional regulation
SPATS2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)