SNP Report
Basic Infomation
| Name | rs60086234 dbSNP |
|---|---|
| Location | chr:1,201344307 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12563097 | 0.89[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12563114 | 0.95[EUR][1000 genomes] |
| rs12564416 | 0.95[EUR][1000 genomes] |
| rs12564577 | 0.85[EUR][1000 genomes] |
| rs12566896 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12567344 | 0.81[EUR][1000 genomes] |
| rs12567382 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12568177 | 0.95[EUR][1000 genomes] |
| rs12568262 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12568802 | 0.95[EUR][1000 genomes] |
| rs2996492 | 0.91[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2996493 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2996494 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3020557 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3730238 | 0.85[EUR][1000 genomes] |
| rs3730240 | 0.85[EUR][1000 genomes] |
| rs56126027 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs56982832 | 0.94[AFR][1000 genomes] |
| rs59982007 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs61152181 | 0.81[EUR][1000 genomes] |
| rs73076669 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73076673 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs74136606 | 0.94[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs74136611 | 0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNT2 | Proximal transcriptional regulation |
| TNNT2 | Distal transcriptional regulation |
| LAD1 | Distal transcriptional regulation |
| TNNT2 | RNA binding protein mediated regulation |
| LAD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014