SNP Report
Basic Infomation
| Name | rs59589798 dbSNP |
|---|---|
| Location | chr:14,68036589 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs35106153 | 1.00[AMR][1000 genomes] |
| rs35917338 | 1.00[AMR][1000 genomes] |
| rs57024266 | 1.00[AMR][1000 genomes] |
| rs57048278 | 1.00[AMR][1000 genomes] |
| rs59922989 | 1.00[AMR][1000 genomes] |
| rs60013875 | 1.00[AMR][1000 genomes] |
| rs60782801 | 1.00[AMR][1000 genomes] |
| rs61011477 | 1.00[AMR][1000 genomes] |
| rs61584136 | 1.00[AMR][1000 genomes] |
| rs73272331 | 1.00[AMR][1000 genomes] |
| rs73274539 | 1.00[AMR][1000 genomes] |
| rs73276671 | 1.00[AMR][1000 genomes] |
| rs73276676 | 1.00[AMR][1000 genomes] |
| rs73276687 | 1.00[AMR][1000 genomes] |
| rs73278432 | 1.00[AMR][1000 genomes] |
| rs73278469 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLEKHH1 | Proximal transcriptional regulation |
| PLEKHH1 | Distal transcriptional regulation |
| TMEM229B | Distal transcriptional regulation |
| PLEKHH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014