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rVarBase
SNP Report
Basic Infomation
Name
rs59128492  
dbSNP
Location
chr:12,48300678
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11168301
0.87[AFR][1000 genomes]
rs11168312
0.80[AFR][1000 genomes]
rs11168322
0.83[AFR][1000 genomes]
rs12318019
0.83[AFR][1000 genomes]
rs12318615
0.80[AFR][1000 genomes]
rs58051519
0.80[AFR][1000 genomes]
rs73295162
0.80[AFR][1000 genomes]
rs74086589
0.80[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
VDR
Proximal transcriptional regulation
ENSG00000205537
Distal transcriptional regulation
VDR
Distal transcriptional regulation
TMEM106C
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)