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rVarBase
SNP Report
Basic Infomation
Name
rs58828153  
dbSNP
Location
chr:1,201301711
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1122482
0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2365650
0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56046473
0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56069235
0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58090509
0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
PKP1
Proximal transcriptional regulation
PKP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)