SNP Report
Basic Infomation
| Name | rs58450802 dbSNP |
|---|---|
| Location | chr:7,98743717 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12531875 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12532625 | 0.83[EUR][1000 genomes] |
| rs12534399 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1807885 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs28545226 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62473003 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62473005 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62473006 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62473007 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62473009 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62473010 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62473011 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62473013 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62473051 | 0.84[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6954584 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SMURF1 | Proximal transcriptional regulation |
| SMURF1 | Distal transcriptional regulation |
| KPNA7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014