SNP Report
Basic Infomation
| Name | rs58367482 dbSNP |
|---|---|
| Location | chr:5,130935741 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs58423926 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59566190 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61263129 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61738669 | 1.00[EUR][1000 genomes] |
| rs73251104 | 1.00[EUR][1000 genomes] |
| rs73251113 | 1.00[EUR][1000 genomes] |
| rs73253032 | 1.00[EUR][1000 genomes] |
| rs73253039 | 1.00[EUR][1000 genomes] |
| rs73253043 | 1.00[EUR][1000 genomes] |
| rs73253044 | 1.00[EUR][1000 genomes] |
| rs73253048 | 1.00[EUR][1000 genomes] |
| rs73256012 | 1.00[EUR][1000 genomes] |
| rs73262153 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73262170 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73264120 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73264142 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73264144 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73268221 | 1.00[EUR][1000 genomes] |
| rs73268225 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73268231 | 1.00[EUR][1000 genomes] |
| rs73268269 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAPGEF6 | RNA binding protein mediated regulation |
| FNIP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014