SNP Report
Basic Infomation
| Name | rs58287554 dbSNP |
|---|---|
| Location | chr:20,30181446 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13339897 | 1.00[AMR][1000 genomes] |
| rs55673231 | 1.00[AMR][1000 genomes] |
| rs55756030 | 1.00[AMR][1000 genomes] |
| rs57165773 | 1.00[AMR][1000 genomes] |
| rs57749616 | 1.00[AMR][1000 genomes] |
| rs57977264 | 1.00[AMR][1000 genomes] |
| rs58310546 | 1.00[AMR][1000 genomes] |
| rs58599245 | 1.00[AMR][1000 genomes] |
| rs59021102 | 1.00[AMR][1000 genomes] |
| rs60401084 | 1.00[AMR][1000 genomes] |
| rs61315857 | 1.00[AMR][1000 genomes] |
| rs73903638 | 1.00[AMR][1000 genomes] |
| rs73903640 | 1.00[AMR][1000 genomes] |
| rs73903643 | 1.00[AMR][1000 genomes] |
| rs73903646 | 1.00[AMR][1000 genomes] |
| rs73903647 | 1.00[AMR][1000 genomes] |
| rs73903648 | 1.00[AMR][1000 genomes] |
| rs73903649 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PTDSS1 | Distal transcriptional regulation |
| PRDX1 | Distal transcriptional regulation |
| LEMD3 | Distal transcriptional regulation |
| PIGB | Distal transcriptional regulation |
| ENSG00000225973 | Distal transcriptional regulation |
| RAB27A | Distal transcriptional regulation |
| BST2 | Distal transcriptional regulation |
| ENSG00000269640 | Distal transcriptional regulation |
| MVB12A | Distal transcriptional regulation |
| PNPT1 | Distal transcriptional regulation |
| MEPCE | Distal transcriptional regulation |
| ZCWPW1 | Distal transcriptional regulation |
| MBTPS2 | Distal transcriptional regulation |
| SNORD12C | Distal transcriptional regulation |
| HM13-AS1 | Distal transcriptional regulation |
| ENSG00000201770 | Distal transcriptional regulation |
| ID1 | Distal transcriptional regulation |
| MIR3193 | Distal transcriptional regulation |
| HM13-IT1 | Distal transcriptional regulation |
| HM13 | Distal transcriptional regulation |
| ENSG00000101898 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014