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rVarBase
SNP Report
Basic Infomation
Name
rs578001  
dbSNP
Location
chr:11,63792977
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs535883
0.84[EUR][1000 genomes]
rs545902
0.83[EUR][1000 genomes]
rs568930
0.81[EUR][1000 genomes]
rs570098
0.83[GIH][hapmap];0.95[TSI][hapmap]
rSNP related genes
Symbol
Regulation type
MACROD1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
eQTL related gene
Source
MS4A6E
SCAN
PLCB3
SCAN
MS4A12
SCAN
GPR137
SCAN
SLC22A12
SCAN
SLC15A3
SCAN
FTH1
SCAN
HNRNPUL2
SCAN
SLC22A24
SCAN
EHD1
SCAN
CFL1
SCAN