SNP Report
Basic Infomation
| Name | rs57644936 dbSNP |
|---|---|
| Location | chr:1,155564122 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs16836868 | 0.81[AFR][1000 genomes] |
| rs59913551 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs60219981 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61732804 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6427277 | 0.83[AMR][1000 genomes] |
| rs6681252 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs72993486 | 0.83[AMR][1000 genomes] |
| rs72995115 | 0.83[AMR][1000 genomes] |
| rs72995165 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs72995166 | 0.85[AFR][1000 genomes] |
| rs72995173 | 0.85[AFR][1000 genomes] |
| rs72997129 | 0.91[AFR][1000 genomes] |
| rs7549653 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs9988540 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000223503 | Proximal transcriptional regulation |
| ASH1L | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014