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rVarBase
SNP Report
Basic Infomation
Name
rs57025045  
dbSNP
Location
chr:6,20529433
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10484635
0.89[AFR][1000 genomes]
rs16883935
0.87[AFR][1000 genomes]
rs16883951
0.87[AFR][1000 genomes]
rs1883641
1.00[ASN][1000 genomes]
rs59729361
0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386523
0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9465781
0.97[EUR][1000 genomes]
rs981042
0.88[AFR][1000 genomes]
rs981043
0.89[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
E2F3
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)