SNP Report
Basic Infomation
| Name | rs565004 dbSNP |
|---|---|
| Location | chr:11,63776177 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1187867 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1211783 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3019784 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3132752 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs320119 | 1.00[AMR][1000 genomes] |
| rs320120 | 1.00[AMR][1000 genomes] |
| rs320123 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs320127 | 0.87[YRI][hapmap] |
| rs320147 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs320148 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs320149 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs320153 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34036129 | 1.00[AMR][1000 genomes] |
| rs35352499 | 1.00[AMR][1000 genomes] |
| rs497037 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4980510 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs4980513 | 1.00[AMR][1000 genomes] |
| rs576548 | 0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60969355 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7126106 | 1.00[AMR][1000 genomes] |
| rs7126239 | 1.00[AMR][1000 genomes] |
| rs901492 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000256824 | Distal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014