SNP Report
Basic Infomation
| Name | rs56277409 dbSNP |
|---|---|
| Location | chr:2,102438241 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10175849 | 1.00[EUR][1000 genomes] |
| rs10205500 | 1.00[EUR][1000 genomes] |
| rs17026041 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4241209 | 1.00[EUR][1000 genomes] |
| rs4851492 | 1.00[EUR][1000 genomes] |
| rs55735247 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56349254 | 0.90[EUR][1000 genomes] |
| rs56982595 | 0.85[AFR][1000 genomes] |
| rs6705340 | 0.89[EUR][1000 genomes] |
| rs6744704 | 1.00[EUR][1000 genomes] |
| rs72989339 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72989351 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72991211 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72991242 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72991252 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7560560 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7560764 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7575034 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7578539 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP4K4 | Proximal transcriptional regulation |
| MAP4K4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014