SNP Report

Basic Infomation

Name	rs56087852 dbSNP
Location	chr:6,21065450
Allele	A/G/T/C

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11969047	0.91[EUR][1000 genomes]
rs11969587	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12661235	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs201296	0.91[EUR][1000 genomes]
rs201298	0.91[EUR][1000 genomes]
rs201299	0.91[EUR][1000 genomes]
rs201316	0.91[EUR][1000 genomes]
rs201317	0.91[EUR][1000 genomes]
rs201318	0.91[EUR][1000 genomes]
rs201319	0.89[EUR][1000 genomes]
rs201320	0.89[EUR][1000 genomes]
rs201322	0.91[EUR][1000 genomes]
rs201323	0.91[EUR][1000 genomes]
rs201324	0.91[EUR][1000 genomes]
rs201325	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs201326	0.91[EUR][1000 genomes]
rs201327	0.91[EUR][1000 genomes]
rs201329	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs201331	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs201332	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs201333	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs201334	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs201335	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs201336	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs201337	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs201338	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2206014	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55655804	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56048657	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56146146	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56163043	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56268013	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59004130	0.92[EUR][1000 genomes]
rs62404460	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62404461	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62404462	0.92[EUR][1000 genomes]
rs62404463	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62404465	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6456392	0.89[EUR][1000 genomes]
rs6456393	0.91[EUR][1000 genomes]
rs6456394	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7748652	0.91[EUR][1000 genomes]
rs7752701	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7754018	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)