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rVarBase
SNP Report
Basic Infomation
Name
rs55839246  
dbSNP
Location
chr:11,61405786
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12274080
1.00[AMR][1000 genomes]
rs12277749
1.00[AMR][1000 genomes]
rs17156169
0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2868407
0.88[AFR][1000 genomes]
rs4343029
0.86[AFR][1000 genomes]
rs55687358
0.95[AFR][1000 genomes]
rs56094524
1.00[AMR][1000 genomes]
rs56803691
1.00[AMR][1000 genomes]
rs57130939
1.00[AMR][1000 genomes]
rs60760433
1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000256591
Distal transcriptional regulation
CPSF7
Distal transcriptional regulation
SDHAF2
Distal transcriptional regulation
ENSG00000240823
Distal transcriptional regulation
SYT7
Distal transcriptional regulation
RPLP0P2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)