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rVarBase
SNP Report
Basic Infomation
Name
rs55750860  
dbSNP
Location
chr:1,1077962
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10907183
0.91[ASN][1000 genomes]
rs1539638
0.82[ASN][1000 genomes]
rs4970357
0.83[ASN][1000 genomes]
rs4970360
0.80[ASN][1000 genomes]
rs4970361
0.80[ASN][1000 genomes]
rs9442360
0.92[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
C1orf159
Distal transcriptional regulation
SDF4
Distal transcriptional regulation
B3GALT6
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)