SNP Report
Basic Infomation
| Name | rs55691766 dbSNP |
|---|---|
| Location | chr:5,96227089 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10434708 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10434709 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11135482 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11135483 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11135484 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11750025 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12189125 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12516666 | 0.80[EUR][1000 genomes] |
| rs12653964 | 0.81[EUR][1000 genomes] |
| rs12654015 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12655858 | 0.87[EUR][1000 genomes] |
| rs13167902 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13189819 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1559354 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1559355 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1559357 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1974871 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2278018 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2278019 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2303209 | 0.86[EUR][1000 genomes] |
| rs3096167 | 0.80[ASN][1000 genomes] |
| rs3096168 | 0.81[ASN][1000 genomes] |
| rs4869311 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4869312 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs56197090 | 0.80[EUR][1000 genomes] |
| rs6868302 | 0.86[EUR][1000 genomes] |
| rs7721944 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP2 | Proximal transcriptional regulation |
| ENSG00000247121 | RNA binding protein mediated regulation |
| ERAP2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014