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rVarBase
SNP Report
Basic Infomation
Name
rs553015  
dbSNP
Location
chr:11,60817026
Allele
T/A
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs175101
0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs175105
0.96[EUR][1000 genomes]
rs175106
0.96[EUR][1000 genomes]
rs175109
0.94[EUR][1000 genomes]
rs482486
0.86[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000256196
Distal transcriptional regulation
TMEM132A
Distal transcriptional regulation
ENSG00000256733
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)