SNP Report
Basic Infomation
| Name | rs4980504 dbSNP |
|---|---|
| Location | chr:11,63873083 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2154984 | 1.00[YRI][hapmap] |
| rs2186571 | 1.00[YRI][hapmap] |
| rs2622420 | 1.00[YRI][hapmap] |
| rs2622424 | 1.00[YRI][hapmap] |
| rs2622428 | 1.00[YRI][hapmap] |
| rs2701537 | 1.00[YRI][hapmap] |
| rs583799 | 1.00[YRI][hapmap] |
| rs594461 | 0.88[CEU][hapmap] |
| rs599549 | 1.00[YRI][hapmap] |
| rs616652 | 1.00[YRI][hapmap] |
| rs638227 | 0.85[CEU][hapmap] |
| rs639406 | 1.00[YRI][hapmap] |
| rs640999 | 0.85[CEU][hapmap] |
| rs641430 | 0.88[CEU][hapmap] |
| rs651855 | 0.88[CEU][hapmap] |
| rs672553 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs687581 | 0.84[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MACROD1 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
| FLRT1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014