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rVarBase
SNP Report
Basic Infomation
Name
rs4968391  
dbSNP
Location
chr:17,57780943
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10853014
0.83[AFR][1000 genomes]
rs11079385
0.89[AFR][1000 genomes]
rs12947232
0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1528491
0.82[EUR][1000 genomes]
rs1554846
0.80[AFR][1000 genomes]
rs35391268
0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71372120
0.80[AFR][1000 genomes]
rs9652857
0.94[AFR][1000 genomes]
rs9913835
0.80[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
VMP1
Proximal transcriptional regulation
PTRH2
Proximal transcriptional regulation
RPS6KB1
Distal transcriptional regulation
CLTC
Distal transcriptional regulation
TUBD1
Distal transcriptional regulation
ENSG00000267526
Distal transcriptional regulation
DHX40
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)