SNP Report
Basic Infomation
| Name | rs4880100 dbSNP |
|---|---|
| Location | chr:9,139410679 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781498 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11145767 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3124603 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs3124604 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3124605 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3124606 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3124607 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3124608 | 0.83[EUR][1000 genomes] |
| rs3125007 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3125008 | 0.87[EUR][1000 genomes] |
| rs3125009 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3125010 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3125012 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7036298 | 0.81[EUR][1000 genomes] |
| rs9411209 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9411254 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9411255 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9411256 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MIR4673 | Distal transcriptional regulation |
| NOTCH1 | Distal transcriptional regulation |
| ENSG00000237886 | Distal transcriptional regulation |
| MIR4674 | Distal transcriptional regulation |
| NOTCH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014