SNP Report
Basic Infomation
| Name | rs4810479 dbSNP |
|---|---|
| Location | chr:20,44545048 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs16990951 | 0.81[CHB][hapmap] |
| rs2868346 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2903809 | 0.97[ASN][1000 genomes] |
| rs3092073 | 0.84[JPT][hapmap] |
| rs3363 | 0.86[CHB][hapmap] |
| rs3746503 | 0.81[CHB][hapmap] |
| rs3746508 | 0.81[CHB][hapmap] |
| rs3746509 | 0.81[CHB][hapmap] |
| rs3746511 | 0.81[CHB][hapmap] |
| rs3746512 | 0.81[CHB][hapmap] |
| rs378114 | 0.85[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs3843763 | 0.99[ASN][1000 genomes] |
| rs394643 | 0.91[JPT][hapmap] |
| rs435306 | 0.86[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs441346 | 0.90[JPT][hapmap] |
| rs4812975 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104410 | 0.86[JPT][hapmap] |
| rs6124759 | 0.81[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLTP | Proximal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014