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rVarBase
SNP Report
Basic Infomation
Name
rs474855  
dbSNP
Location
chr:11,64566771
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs540012
0.90[AFR][1000 genomes]
rs57952712
1.00[EUR][1000 genomes]
rs9285810
0.86[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
MAP4K2
Proximal transcriptional regulation
SF1
Distal transcriptional regulation
ENSG00000269038
Distal transcriptional regulation
CDC42BPG
Distal transcriptional regulation
MAP4K2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)