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rVarBase
SNP Report
Basic Infomation
Name
rs4705893  
dbSNP
Location
chr:5,131075921
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17132144
0.82[EUR][1000 genomes]
rs17171380
1.00[CEU][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17671387
1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
FNIP1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
RAD50
SCAN
RAPGEF6
SCAN
FNIP1
SCAN