SNP Report
Basic Infomation
| Name | rs439963 dbSNP |
|---|---|
| Location | chr:16,11364783 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs152310 | 1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs166057 | 1.00[AMR][1000 genomes] |
| rs181583 | 1.00[AMR][1000 genomes] |
| rs181584 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs181695 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs183100 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs193777 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs193780 | 0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs243320 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs243326 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs27829 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs365461 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs41355 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55726383 | 1.00[AMR][1000 genomes] |
| rs57435104 | 1.00[AMR][1000 genomes] |
| rs58137497 | 1.00[AMR][1000 genomes] |
| rs58145930 | 1.00[AMR][1000 genomes] |
| rs59027029 | 1.00[AMR][1000 genomes] |
| rs59400061 | 1.00[AMR][1000 genomes] |
| rs59954524 | 1.00[AMR][1000 genomes] |
| rs60362542 | 1.00[AMR][1000 genomes] |
| rs61350447 | 1.00[AMR][1000 genomes] |
| rs61699439 | 1.00[AMR][1000 genomes] |
| rs7205925 | 1.00[CHD][hapmap] |
| rs73511423 | 1.00[AMR][1000 genomes] |
| rs74007620 | 1.00[AMR][1000 genomes] |
| rs74007622 | 1.00[AMR][1000 genomes] |
| rs74007628 | 1.00[AMR][1000 genomes] |
| rs74007629 | 1.00[AMR][1000 genomes] |
| rs74007631 | 1.00[AMR][1000 genomes] |
| rs74007633 | 1.00[AMR][1000 genomes] |
| rs74007634 | 1.00[AMR][1000 genomes] |
| rs74007636 | 1.00[AMR][1000 genomes] |
| rs74007637 | 1.00[AMR][1000 genomes] |
| rs74007638 | 1.00[AMR][1000 genomes] |
| rs74007665 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNP2 | Proximal transcriptional regulation |
| TNP2 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014