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rVarBase
SNP Report
Basic Infomation
Name
rs4246943  
dbSNP
Location
chr:10,81060005
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12355688
0.80[CEU][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap]
rs4980060
0.80[CEU][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap]
rs7905321
0.80[CEU][hapmap];0.89[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
ZMIZ1
Distal transcriptional regulation
PPIF
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
TGFB1I1
SCAN
TGFB1I1
seeQTL