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rVarBase
SNP Report
Basic Infomation
Name
rs4246905  
dbSNP
Location
chr:9,117553249
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1322055
1.00[YRI][hapmap]
rs3810936
0.83[CEU][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs4372078
1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6478108
0.84[MEX][hapmap]
rs6478109
0.84[MEX][hapmap]
rs7848647
0.84[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
ENSG00000221734
Proximal transcriptional regulation
TNFSF15
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)