SNP Report
Basic Infomation
| Name | rs3917273 dbSNP |
|---|---|
| Location | chr:2,102779719 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10181869 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs10184597 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs1030021 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs13020778 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2160227 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs3771200 | 0.80[YRI][hapmap] |
| rs3917265 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs3917267 | 0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes] |
| rs3917279 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs3917304 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs3917318 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs7582198 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs951192 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs997049 | 0.83[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1R1 | Proximal transcriptional regulation |
| IL1R2 | Distal transcriptional regulation |
| IL1R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014